My problem with the Catholic Church is not that there were a few bad apples who molested children. It's that these bad apples were not treated as problems but instead whisked away from problems and put into positions where they could carry out the same problems.

What kind of rational human puts an accused Child Molester in charge of a school?

It's also not just one scandal. There is a long history of the Church carrying out all sorts of atrocities one after the other.

Here is a woefully incomplete list:

Protection of Child Molesters
Support of Fascists, Dictators and Despots.
Support and Encouragement of Holy Wars
Aggressive Repression of the Truth (Scientific or Otherwise)
Aggressive Repression of Human Rights outside those decreed in the bible.